PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G232300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29725.7 Da PI: 8.5362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.7 | 1.6e-09 | 35 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGV + +++W A+I + + ++lg++ t+eeAa a+++a++kl + Gorai.008G232300.1 35 FKGVLPLE-SHKWGARISF------NyRAYWLGTYYTEEEAAIAYDRAALKLLK 81 66664333.699****999......34************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.02E-15 | 33 | 91 | No hit | No description |
SMART | SM00380 | 3.2E-11 | 34 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-14 | 34 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.407 | 34 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 34 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-4 | 37 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-4 | 146 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-11 | 147 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-9 | 148 | 212 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-5 | 188 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEGSPNSNNK TTPYQKISGR CSGTDTGSRR LSTRFKGVLP LESHKWGARI SFNYRAYWLG 60 TYYTEEEAAI AYDRAALKLL KTDAPLNLPY NIYTPQEKSF QSWYSDDEIL NMIKDKTYSS 120 HFTVHQSLAK KTLPGSLTNA KGLSYEMLFH KELTQIDVSN ADLFQIPKEY ALQFLPPVGN 180 NSSENGVFLF AKGWRDFVIM NSLNPGDTVI FYGCYHVDEE GQKRMFYMID IHRNVPEKYI 240 VSERYVDGIN GVKLFGVRIG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439443.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A1U8MTA4 | 1e-179 | A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
STRING | Gorai.008G232300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20740 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-35 | RAV family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G232300.1 |