PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G228800.1 | ||||||||
Common Name | B456_008G228800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 569aa MW: 62865.9 Da PI: 6.5899 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.5 | 4e-25 | 317 | 372 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 k +++Wtp LH++Fv+av+qL G+++A+P++ilelmk++gLt+++v+SHLQ kYR++ Gorai.008G228800.1 317 KSKVDWTPALHKKFVQAVDQL-GIDQAIPSRILELMKIEGLTRHNVASHLQqKYRMH 372 6799*****************.****************************549**86 PP | |||||||
2 | Response_reg | 27.4 | 1.7e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+ d++ + ++ l++ le +y +v ++ + eal + + +++ ++ i+ + +G+ +k +++++ +lp i+ + +++ ++ Gorai.008G228800.1 20 VLLLDEDSNSASELKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEINTNKKNGS--FKFLETAK-DLPTIMTSNIHCISTMMKC 106 79999******************.***************666666**************97..67777766.999*99999889******* PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + +Ga +fl Kp ++e+l++ Gorai.008G228800.1 107 IALGAVEFLKKPLSEEKLRN 126 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.0E-16 | 16 | 137 | No hit | No description |
SuperFamily | SSF52172 | 2.56E-15 | 16 | 134 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 20.595 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-7 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.85E-8 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 11.476 | 314 | 375 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.09E-15 | 315 | 374 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 315 | 375 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-22 | 317 | 372 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MICTTNDLSA WKDFPKGLKV LLLDEDSNSA SELKSKLEAM DYIVYTFCNE NEALSAVSSR 60 PESFHVAIVE INTNKKNGSF KFLETAKDLP TIMTSNIHCI STMMKCIALG AVEFLKKPLS 120 EEKLRNIWQH VVRKAFNAVG TDLSESVKPV KESLVSMLYL QLENGEPKNK DLDKTQDASV 180 IHENDPEPST GSDKYPAPST PQIEQGGRLS ANGDCQDHAN CSIEKESSEE DGESKSVETT 240 SDNTIAEVTI PVGQPQGPRD TMVTEEADLV DGTKGKSTTY SQTENGVNSK NSQAVAEKPS 300 TVSGIHSSCL NKANRKKSKV DWTPALHKKF VQAVDQLGID QAIPSRILEL MKIEGLTRHN 360 VASHLQQKYR MHRKHILPKE DDRRWPQRDQ TQKSCYPHKP IIAFPSHYSN HVVPVGPLYP 420 MWGAPPYPSS IQMWGSQGYP LWQPTESWQW KPYPGVHADA WGCPVMPPPH GYSSAFTQVS 480 SYQNASVFHC SGTMDNRSGM PQNSVEHQPA EEVIDKVVKE AINKPWLPLP LGLKPPSTDT 540 VLAELSKQGI STFPPHINGL NSSCHGTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-15 | 317 | 374 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439372.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_012439373.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-140 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A0D2Q012 | 0.0 | A0A0D2Q012_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G228800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5746 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-137 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G228800.1 |
Publications ? help Back to Top | |||
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