PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G225600.1
Common NameB456_008G225600, LOC105764996
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 329aa    MW: 35914.7 Da    PI: 7.6431
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G225600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-0882106126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ GtC+y  +C+FaH+
  Gorai.008G225600.1  82 FKTKLCCKFRA-GTCPYIKNCNFAHS 106
                         69*********.*************8 PP
2zf-CCCH18.73e-06156181126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  Gorai.008G225600.1 156 YKGRHCKKFYTEEGCPYGDNCTFLHD 181
                         78888********************7 PP
3zf-CCCH35.12.3e-11225248124
                         --S---SGGGGTS--TTTTT-SS- CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFa 24 
                         +kt++C+ +  tG+C++G++C+Fa
  Gorai.008G225600.1 225 WKTRICNKWELTGYCPFGNKCHFA 248
                         8**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.76E-879112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-1479114IPR000571Zinc finger, CCCH-type
SMARTSM003560.003581107IPR000571Zinc finger, CCCH-type
PROSITE profilePS501031381108IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-582106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-9153183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-7154183IPR000571Zinc finger, CCCH-type
SMARTSM003560.058155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23155183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-14219254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8221251IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5224251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836224252IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8225248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDYSRDNVVH VIPNPIDPSV WATEEDYRAW NSEETFNDTP SNFSYDQRQP QSRSNSDMPP  60
NKKSRNSQDL NSRSKAIGKM FFKTKLCCKF RAGTCPYIKN CNFAHSIEEL RRPPPNWQEI  120
VAAHEEEKGI LAEPREEFHI PSLGSNSFSG ETQRSYKGRH CKKFYTEEGC PYGDNCTFLH  180
DEQSKNRESV AISLGPGGYG GGGGGGGGAA SGGCGSGSNV KPSNWKTRIC NKWELTGYCP  240
FGNKCHFARG VAELHRHGGA LGDTEAKDSF VAPFDSKQAG GAPLKTPADT MAASIPSVPL  300
SDLGVPSQRT YCTPETRTNN SPQLEGSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439310.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ84UQ32e-97C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
SwissprotQ9LQM33e-97C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D2T5280.0A0A0D2T528_GOSRA; Uncharacterized protein
STRINGGorai.008G225600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-100C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]