PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G222300.1

Common Name

B456_008G222300, LOC105764965

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BBR-BPC

Protein Properties

Length: 235aa MW: 25459.3 Da PI: 10.5208

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G222300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	244.4	7.8e-75	42	234	109	301
GAGA_bind 109 dslqqlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197 + + ++ep l s++ + +e +++ + ++++++ ++k++ k++++ pk+ k++ kk++ + kk k +s +++k+ekk+ +++ Gorai.008G222300.1 42 QRTGIHHEPGLVVSPIRtiAATTESGNNNDLGTKTTKVGKQKSSVKGSNQIAPKVLGPKQPMKKPSLP-KKGKGPSI-PETKREKKNPNIN 130 5555555555555555533455666677788888999999999999999********999988777.55566665.699****** PP GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288 l+g ++D s++P P+CsCtG+ r+CYkWG+ GWqS+CCt++iS PLP+s++r+gaR+agrKmS+ga+ klL +LaaeGydls+pvDLkdh Gorai.008G222300.1 131 LDGTKFDFSGVPSPICSCTGVARVCYKWGASGWQSSCCTINISECPLPMSPTRPGARVAGRKMSNGAYFKLLLRLAAEGYDLSHPVDLKDH 221 *************************************************************************************** PP GAGA_bind 289 WAkHGtnkfvtir 301 WA+HGtnkfvti+ Gorai.008G222300.1 222 WARHGTNKFVTIK 234 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.6E-78	1	234	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.9E-66	77	234	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MKMRSYSDKN VMPETEIGST GSPFSWLYHY NPTSKPGFSS LQRTGIHHEP GLVVSPIRTI 60 AATTESGNNN DLGTKTTKVG KQKSSVKGSN QIAPKVLGPK QPMKKPSLPK KGKGPSIPET 120 KREKKNPNIN LDGTKFDFSG VPSPICSCTG VARVCYKWGA SGWQSSCCTI NISECPLPMS 180 PTRPGARVAG RKMSNGAYFK LLLRLAAEGY DLSHPVDLKD HWARHGTNKF VTIK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439264.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_012439265.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_012439266.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_016736554.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_016736555.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_016736556.1	1e-174	PREDICTED: protein BASIC PENTACYSTEINE7-like
Swissprot	O82286	2e-72	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A0D2TAR1	1e-172	A0A0D2TAR1_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NC14	1e-172	A0A1U8NC14_GOSHI; protein BASIC PENTACYSTEINE7-like
STRING	Gorai.008G222300.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	3e-68	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Gorai.008G222300.1
Entrez Gene	105764965

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]