PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G221900.2 | ||||||||
Common Name | B456_008G221900, LOC105764962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 225aa MW: 25346.5 Da PI: 8.9644 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.4e-33 | 29 | 83 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Gorai.008G221900.2 29 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.619 | 26 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-32 | 26 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-16 | 29 | 86 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-25 | 29 | 84 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-9 | 31 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-20 | 118 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MERLNYGGGG GGEGNYWYEN EVVMSRDPKP RLRWTADLHD RFVDAVTKLG GPDKATPKSV 60 LRLMGMKGLT LYHLKSHLQK YRLGQQTRKQ NAVDLNKVNG GTIITNSPRA DSEQRQIPVA 120 EALKNQLEVQ QTLQEQLEVE KKLQMRIDAQ GKYLQAILEK AQKRVSIDIN YCEGNGEEET 180 NFSVLNKANC SAFQNYGGRR RENSKDVKLE VEGDSTAFDL KDQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 29 | 82 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439260.1 | 1e-167 | PREDICTED: myb family transcription factor APL-like isoform X3 | ||||
Swissprot | C0SVS4 | 2e-67 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A0D2U7N7 | 1e-165 | A0A0D2U7N7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G221900.1 | 1e-155 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-54 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G221900.2 |
Entrez Gene | 105764962 |
Publications ? help Back to Top | |||
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