PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G200600.1

Common Name

B456_008G200600, LOC105764737

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 191aa MW: 21402.9 Da PI: 7.2757

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G200600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.7	2.9e-14	96	154	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr rr+++NRe+ArrsR RKk++ieeL+ v +L++ N++L ++l +l ++ + +e+ Gorai.008G200600.1 96 KRLRRMISNRESARRSRMRKKQQIEELQSQVNQLQTINRQLSQKLINLLENNHEILQEN 154 9*******************************************999988888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-15	92	156	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.668	94	157	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-12	96	168	No hit	No description
Pfam	PF00170	1.3E-12	96	154	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-11	96	147	No hit	No description
CDD	cd14702	3.27E-18	97	148	No hit	No description
PROSITE pattern	PS00036	0	99	114	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEVPGFDVDG DPQPHGHGSL IQSLFAFCPS QKALTTSATH INMESWDGNS SSSQHPDSGI 60 FSHRLSPNTQ IHLFSPNPSN EDEGRMCQAS IVVDEKRLRR MISNRESARR SRMRKKQQIE 120 ELQSQVNQLQ TINRQLSQKL INLLENNHEI LQENAQLKEK VSTLHMVLSD VFAPLRNSDD 180 SSSMKPKSAS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243114	0.0	AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438913.1	1e-138	PREDICTED: basic leucine zipper 43-like
Refseq	XP_016737700.1	1e-138	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2PXH4	1e-137	A0A0D2PXH4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NFA6	1e-137	A0A1U8NFA6_GOSHI; basic leucine zipper 43-like
STRING	Gorai.008G200600.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	2e-26	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	Gorai.008G200600.1
Entrez Gene	105764737

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]