PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G194400.3

Common Name

B456_008G194400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 303aa MW: 34072.8 Da PI: 9.3091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G194400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114	1.6e-35	8	86	50	129
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Gorai.008G194400.3 8 KAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 86 4567899************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.914	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-41	7	110	IPR003441	NAC domain
Pfam	PF02365	4.3E-17	14	85	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MCCLVAGKAK MGEKEWYFFC VRDRKYPTGL RTNRATDSGY WKATGKDKEI YRGKSLVGMK 60 KTLVFYKGRA PKGEKTNWVM HEYRLEGKYS VHNLPKTAKN EWVICRVFQK SSGGKKTHIS 120 GLVNMGSFGN ELGPSVLPPL MDSSSSFNAK KNPVSESVYV PCFSNPVDVQ RIQLDTIDHF 180 PENPLLLPVS SNPTNIFPRF QAPNPFFSAQ PVTFPPNLHL PGSVLMQDQS ILRDLLENHG 240 SNMKSERETM VSVSQETGLT TDINNEISSV VSNLEIRKRP FNDQQHPSAS TGPLDFDCFW 300 HY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-34	4	116	64	174	NAC domain-containing protein 19
3swm_B	4e-34	4	116	64	174	NAC domain-containing protein 19
3swm_C	4e-34	4	116	64	174	NAC domain-containing protein 19
3swm_D	4e-34	4	116	64	174	NAC domain-containing protein 19
3swp_A	4e-34	4	116	64	174	NAC domain-containing protein 19
3swp_B	4e-34	4	116	64	174	NAC domain-containing protein 19
3swp_C	4e-34	4	116	64	174	NAC domain-containing protein 19
3swp_D	4e-34	4	116	64	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1097	0.0	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48745579	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914142	0.0	JQ914142.1 Gossypium hirsutum NAC domain protein 11 (NAC11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438781.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-113	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D2T8X5	0.0	A0A0D2T8X5_GOSRA; Uncharacterized protein
STRING	Gorai.008G194400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-115	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Gorai.008G194400.3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]