PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G193400.1

Common Name

B456_008G193400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 301aa MW: 34560.4 Da PI: 6.54

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G193400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.9e-26	142	191	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Gorai.008G193400.1 142 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 191 67899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	117	211	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-21	144	191	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MANQCSLNGC WFKSSEMIAK EEEEHYSSPF PPRLPLDSSS TVYCNPMDWQ FPIEQGFYDE 60 VPLMSTFSTD PLYASLDIEQ TSTPTQDGYD GNGFWDELGL LFEPCNKQPM LKDEDINGEG 120 VMKKERVSSK RCKEDQRNIR AKLLSRKVIS QYFYMPIIQA AKELNVGLTL LKKRCRELGI 180 RRWPHRKLTS LRTLINNVQE LEEGEERESK VREAIEVLER ERKMLEEMPD MDLEDKTKRL 240 RQACFKANYK KRKLVPPSIM TQSPSSTGAV GSRASDLDLI TRANCRRGLS DSFSSTITMI 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580452	3e-92	JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435574.1	0.0	PREDICTED: protein RKD1-like
TrEMBL	A0A0D2U5Z2	0.0	A0A0D2U5Z2_GOSRA; Uncharacterized protein
STRING	Gorai.008G193400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.008G193400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]