PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G190300.4 | ||||||||
Common Name | B456_008G190300, LOC105764614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 29051.2 Da PI: 4.4221 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 36 | 89 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Gorai.008G190300.4 36 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 89 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.2e-41 | 35 | 127 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L+ee+ Gorai.008G190300.4 35 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKETDKLKEEV 125 69**************************************************************************************998 PP HD-ZIP_I/II 92 ke 93 + Gorai.008G190300.4 126 VQ 127 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.329 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-18 | 34 | 95 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-18 | 35 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-16 | 36 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.67E-17 | 36 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 38 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.5E-6 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-6 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-15 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVSFEGVDRR RSYFRTFDGE EKVEEDIEEY LHRSEKKRRL TVDQVQFLEK SFEAENKLEP 60 DRKVQLAKDL GLQSRQVAIW FQNRRARWKT KQLEKDYDSL QASYNSLKAD YDNLVKETDK 120 LKEEVVQLTD KLLLEGKDKG EPELPDAKTS SQELPSEAAE GEESKVVPVV SAKSDYTEGV 180 HSSVLLEGAG STYPFEPDQS DLSQDEEDNL SKGLLHLPSC VFPKLQDIDY SDPPAGSCNF 240 GFPLDDHAFW SWAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438715.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
Swissprot | Q02283 | 4e-43 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A0D2PXJ8 | 0.0 | A0A0D2PXJ8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2U5T4 | 0.0 | A0A0D2U5T4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G190300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-44 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G190300.4 |
Entrez Gene | 105764614 |
Publications ? help Back to Top | |||
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