PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G190300.2
Common NameB456_008G190300, LOC105764614
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34674.4 Da    PI: 4.4526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G190300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1990143356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Gorai.008G190300.2  90 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 143
                         56689************************************************9 PP
2HD-ZIP_I/II127.46.3e-4189181193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L+ee+
  Gorai.008G190300.2  89 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKETDKLKEEV 179
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 ke 93 
                          +
  Gorai.008G190300.2 180 VQ 181
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.32985145IPR001356Homeobox domain
SMARTSM003898.4E-1888149IPR001356Homeobox domain
SuperFamilySSF466892.48E-1889155IPR009057Homeodomain-like
PfamPF000461.4E-1690143IPR001356Homeobox domain
CDDcd000864.75E-1790146No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2092153IPR009057Homeodomain-like
PRINTSPR000318.8E-6116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000318.8E-6125141IPR000047Helix-turn-helix motif
PfamPF021832.6E-15145186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGGRVYRSN TSADAGSNNL SVLLQSQWVP SSSEPLDTLF IPGSSPSPFL GTRSMVSFEG  60
VDRRRSYFRT FDGEEKVEED IEEYLHRSEK KRRLTVDQVQ FLEKSFEAEN KLEPDRKVQL  120
AKDLGLQSRQ VAIWFQNRRA RWKTKQLEKD YDSLQASYNS LKADYDNLVK ETDKLKEEVV  180
QLTDKLLLEG KDKGEPELPD AKTSSQELPS EAAEGEESKV VPVVSAKSDY TEGVHSSVLL  240
EGAGSTYPFE PDQSDLSQDE EDNLSKGLLH LPSCVFPKLQ DIDYSDPPAG SCNFGFPLDD  300
HAFWSWAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438716.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A0D2T3020.0A0A0D2T302_GOSRA; Uncharacterized protein
STRINGGorai.008G190300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]