PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G190300.1
Common NameB456_008G190300, LOC105764614
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34860.6 Da    PI: 4.4526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G190300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1992145356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Gorai.008G190300.1  92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145
                         56689************************************************9 PP
2HD-ZIP_I/II127.36.4e-4191183193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L+ee+
  Gorai.008G190300.1  91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKETDKLKEEV 181
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 ke 93 
                          +
  Gorai.008G190300.1 182 VQ 183
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.32987147IPR001356Homeobox domain
SMARTSM003898.4E-1890151IPR001356Homeobox domain
SuperFamilySSF466892.78E-1891157IPR009057Homeodomain-like
PfamPF000461.5E-1692145IPR001356Homeobox domain
CDDcd000864.11E-1792148No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2094155IPR009057Homeodomain-like
PRINTSPR000318.9E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000318.9E-6127143IPR000047Helix-turn-helix motif
PfamPF021832.6E-15147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGGRVYRSN TSADAGSNNL SVLLQSQWVP SSSEPLDTLF IPGSSPSPFL VSGTRSMVSF  60
EGVDRRRSYF RTFDGEEKVE EDIEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV  120
QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSLQASY NSLKADYDNL VKETDKLKEE  180
VVQLTDKLLL EGKDKGEPEL PDAKTSSQEL PSEAAEGEES KVVPVVSAKS DYTEGVHSSV  240
LLEGAGSTYP FEPDQSDLSQ DEEDNLSKGL LHLPSCVFPK LQDIDYSDPP AGSCNFGFPL  300
DDHAFWSWAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438715.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022836e-45HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D2U5T40.0A0A0D2U5T4_GOSRA; Uncharacterized protein
STRINGGorai.008G190300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]