PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G186800.1
Common NameB456_008G186800, LOC105764573
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 502aa    MW: 55904.8 Da    PI: 7.1546
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G186800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP152.62.4e-471172742134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eae 76 
                         +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+aikelt++               ss+s+se+ +a+
  Gorai.008G186800.1 117 TGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKAAIKELTENlpalkhrcseggksvSSTSESEVvSAA 207
                         79**************************************************************988888887777655222222222222 PP

                 TCP  77 sssssasnsssg...............kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                         ++ +       +               ++ ++a  ++++++++ + ++ +a+esr karararertrekmr+++
  Gorai.008G186800.1 208 KECQ-------DnmgdqqgiiasgeamRSTTTARvTKERKSRKVSFNHIVARESRDKARARARERTREKMRMRD 274
                         2222.......02333444667887885555555577777777777788888********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.5E-47117272IPR005333Transcription factor, TCP
PROSITE profilePS5136937.144119177IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.753252269IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MFPSSNSYNP CPSTIHAMPG NSISADQHPA DSSLEDHPPP FFNFPASFFD DDDDDGLLMS  60
HLLSQAQQQI LGSSSNTAPP DSEINAAPPI KETKKVPPNR KRSSSNGAKQ GIPRKRTGKK  120
DRHSKIYTAH GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFSKS KAAIKELTEN  180
LPALKHRCSE GGKSVSSTSE SEVVSAAKEC QDNMGDQQGI IASGEAMRST TTARVTKERK  240
SRKVSFNHIV ARESRDKARA RARERTREKM RMRDLEKTNK CSDESNPNEL EELQSSSPLE  300
IGENSGPSTE TNYSLKVVTE KPHRNTADSD SIEHQMDFVS TVEKFLGITR SSSMFNYSNN  360
IADSREENSA ENCPVFSGNW GMNNERIHYS YCAMTNIKDS TGITQEQNPS IIFMTDPNEQ  420
EQKFSSSFMS NSNTQAENST TNLIANSYAK MMNHNSDLTN PSNAHEGRNP TSILMSSSHI  480
GLHSDYHENP AVASKFHHFY L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438655.10.0PREDICTED: transcription factor TCP12
TrEMBLA0A0D2RHR00.0A0A0D2RHR0_GOSRA; Uncharacterized protein
STRINGGorai.008G186800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-32TCP domain protein 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]