PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G185000.2

Common Name

B456_008G185000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 438aa MW: 47920.7 Da PI: 6.9598

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G185000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	173	211	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L++ + Gorai.008G185000.2 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTELEQ 211 788*************************86666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.9E-8	165	216	No hit	No description
SMART	SM00338	5.1E-10	169	240	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.3E-7	171	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	171	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	173	216	No hit	No description
CDD	cd14708	3.75E-24	173	225	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-29	258	329	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHPAAAFHH DDAFDLSPSS 60 IFSLKSNNVG VVANTLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI 120 ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQLGAVMVD SVDQSKSKSG DQKTLRRLAQ 180 NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA 240 LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV 300 FHMLSGMWKT PAERCFMWLG GFRSSELLKS SQQAEDALSQ GMEALQQSLV DTLSSASLGP 360 SASGNVADYM GQMAIAMGKL ATLENFLHQA DLLRQQTLQQ MHRILTTRQA ARALLVFSDY 420 TSRLRALSSL WLARPRN*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHPAAAFHH DDAFDLSPSS  60
IFSLKSNNVG VVANTLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI  120
ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQLGAVMVD SVDQSKSKSG DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA  240
LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV  300
FHMLSGMWKT PAERCFMWLG GFRSSELLKS SQQAEDALSQ GMEALQQSLV DTLSSASLGP  360
SASGNVADYM GQMAIAMGKL ATLENFLHQA DLLRQQTLQQ MHRILTTRQA ARALLVFSDY  420
TSRLRALSSL WLARPRN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438631.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q9SX27	1e-168	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A0D2PX51	0.0	A0A0D2PX51_GOSRA; Uncharacterized protein
STRING	Gorai.008G185000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-124	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G185000.2

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]