PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G183300.1
Common NameB456_008G183300, LOC105764537
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 339aa    MW: 37034.2 Da    PI: 4.6269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G183300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-18123171254
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         +  GVr++k +g+W+AeIr+p +   ++r++lg+++t eeAaka++a ++++e
  Gorai.008G183300.1 123 KPVGVRQRK-WGKWAAEIRHPLK---KTRIWLGTYDTLEEAAKAYEAKKLEFE 171
                         789*****9.**********743...5********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-21122170No hitNo description
PfamPF008471.9E-12123172IPR001471AP2/ERF domain
PROSITE profilePS5103218.386123182IPR001471AP2/ERF domain
SMARTSM003801.5E-15123177IPR001471AP2/ERF domain
PRINTSPR003671.1E-7124135IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16125170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-21126170IPR001471AP2/ERF domain
PRINTSPR003671.1E-7146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLEHRKQTMN LSKSCKKPKK PQSTMSEEET QMTRKVRVIF HDPYATDSSS SEDESEGSAA  60
RKAPRGRRFV REMRVPVLGL APQVKPLESE TSSQDSNSKT PTSRKRVLSR TLEDKPLVAK  120
TKKPVGVRQR KWGKWAAEIR HPLKKTRIWL GTYDTLEEAA KAYEAKKLEF EALTVAAAAS  180
ASSDKTNDLS CSAAASHNNT VPSASEESES LVSHTSPSSV HELDTSASVS VSNNNDDCGD  240
ANKEVFDANF ADIPIPDLCF IDDPLLSGSV GQELNIDAEA ADYLFVNDFG MMLEDYCSIE  300
DLSICGIGAD EPSDLPDCDF STDDFVFDEV APLNIACP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438611.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_012438612.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_012438613.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A0D2PX390.0A0A0D2PX39_GOSRA; Uncharacterized protein
STRINGGorai.008G183300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-37ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]