PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G178000.2
Common NameB456_008G178000, LOC105764478
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 490aa    MW: 53723 Da    PI: 9.8186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G178000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001598117221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk F++   L  H++
  Gorai.008G178000.2  98 VCKECGKGFRSLKALCGHMS 117
                         8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1897124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-498125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-699121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM003550.18340362IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.24E-6340362No hitNo description
PROSITE profilePS5015710.097340367IPR007087Zinc finger, C2H2
PfamPF139124.7E-6340363IPR007087Zinc finger, C2H2
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-6418445No hitNo description
SMARTSM003550.19423445IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871423445IPR007087Zinc finger, C2H2
PfamPF139122.2E-8423445IPR007087Zinc finger, C2H2
PROSITE patternPS000280425445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MKNAVFSKVL SFATKGSHVG SRHIRTHMKH DSFAETEEES ADMPINRLIS TANPRNIKRF  60
VVSDAGGQSA AYGLRENPKK TKRFSDSGNG SSLKEMLVCK ECGKGFRSLK ALCGHMSCHS  120
DNGEKQKVIM DSQSDTETSA PSKRRSRRGT PKTIGVYRNN NSENLGNGSS SVSEIVQEQE  180
EVAMCLMMLS RDSGCRKRMN SAADSSDNNS VVLEDKSSSI DVTITIKNDM NRGGLLKMTK  240
QRDNKLKKSP ESDPSSENSD SGYFRNGPKK VESDDSVDGF LKNNEFKKPN IESGSGFRDR  300
DATYSKCLSK FKSVKTGSPK YDLRKNGKND YYSPQKGSKY ECLTCNKTFD SHRALGGHRA  360
SHTKVNGYNE SIQESYEAND SFTAPMTDTK VTKASSNGKR LGVPRGSSYN AEKRLGSKKN  420
KGHECPFCFR VFKSGQALGG HKRSHFVGGS DDRTLVIKQD SSDMPALIDL NLPAPVEEDA  480
FGNAAGFMP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438523.10.0PREDICTED: zinc finger protein 37-like isoform X2
TrEMBLA0A0D2U5420.0A0A0D2U542_GOSRA; Uncharacterized protein
STRINGGorai.008G178000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-70C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]