PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G174500.1

Common Name

B456_008G174500, LOC105764438

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 197aa MW: 22605.6 Da PI: 6.5113

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G174500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.7e-14	81	130	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ Gorai.008G174500.1 81 RKQRRMISNRESARRSRMRKQKHLDELLSQVVRLRNENQSLIDKLKHVSD 130 79****************************************99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-15	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	79	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-12	81	130	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-12	81	153	No hit	No description
SuperFamily	SSF57959	1.61E-12	81	130	No hit	No description
CDD	cd14702	9.46E-19	82	133	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MVPSELSTGL HYLAPENPIL IPDNLGMMQN TIPGFHFDRF LNIQSNSHIP LPAHEFIAQS 60 LCTSTSDEAE EHQLSRIIDE RKQRRMISNR ESARRSRMRK QKHLDELLSQ VVRLRNENQS 120 LIDKLKHVSD CHDQVVQENA RLKEEASDLR RMVTDLRTGS PYSLALRELE DVPCYTAYLR 180 AEPTNQSIAN SVDLLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438457.1	1e-143	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2PWI4	1e-142	A0A0D2PWI4_GOSRA; Uncharacterized protein
STRING	Gorai.008G174500.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	3e-40	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Gorai.008G174500.1
Entrez Gene	105764438

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]