PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G155000.1 | ||||||||
Common Name | B456_008G155000, LOC105764221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 47088.4 Da PI: 8.1905 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.8e-27 | 156 | 210 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ Gorai.008G155000.1 156 KVKVDWTPELHRRFVQAVEQL-GLDKAVPSRILELMGIQCLTRHNIASHLQKYRSH 210 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.468 | 153 | 212 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.45E-18 | 154 | 213 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 154 | 213 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-26 | 156 | 210 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-8 | 159 | 208 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLAVSPLRNT TEDENKGAME SFRFNISSEE FPDFYHGNLL ESIDFEDLFV DGYVLPDLEM 60 DPEILAELPA PGGEDPEMNV SVEETGDGYN QRKEEEGKVS DPGSSSGSAL GWSRSKGEEI 120 VSKREEGRAV KTTLKDADKG RKSPAQAKNN NQGKRKVKVD WTPELHRRFV QAVEQLGLDK 180 AVPSRILELM GIQCLTRHNI ASHLQKYRSH RKHLLAREAA TVASWTQKSQ ICGAATTPAG 240 GGKRDKNPWL APTMGFPPMS PSSPLHHHFR PLHVWGHPTV DQSLIHLWPK HLAPPPPPPR 300 PTWEPPRAGP SYWHHHPKRV TNGISPGTPC FPQPLPLATR RFAAAPVPGI QPHHGTMYKA 360 DPGIGVRSRP HPLMDFHPSK ESIDAAIGDV LSKPWQPLPL GLKPPASDTV LGELQRPGLP 420 NIPPFSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-14 | 153 | 208 | 2 | 57 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438187.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X1 | ||||
Swissprot | Q9SIV3 | 3e-96 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A0D2U3U2 | 0.0 | A0A0D2U3U2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G155000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 7e-89 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G155000.1 |
Entrez Gene | 105764221 |