PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G107900.1
Common NameB456_008G107900, LOC105763739
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32180.2 Da    PI: 8.1003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G107900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-19134188256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Gorai.008G107900.1 134 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTK 188
                         788899***********************************************98 PP
2HD-ZIP_I/II127.27.2e-41134223191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Gorai.008G107900.1 134 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELR-AL 223
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.8E-301101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.2E-19118184IPR009057Homeodomain-like
SuperFamilySSF466895.99E-19121191IPR009057Homeodomain-like
PROSITE profilePS5007117.427130190IPR001356Homeobox domain
SMARTSM003897.3E-16132194IPR001356Homeobox domain
PfamPF000463.4E-16134188IPR001356Homeobox domain
CDDcd000862.04E-16134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PfamPF021831.8E-11190224IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.9E-27190233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGDKDDGLGL SLSLGCGQNQ PSSKLNFMFL ASNPLQNLQQ NKTWNRLCLS SDGHMDTGSF  60
LRGIDVNRAP AATVDCEEEG GGVSSPNSTI STISGKKNER DHVADETEAE RDSCSRASDD  120
EDGGGNAGGG DASRKKLRLS KEQSMVLEET FKEHSTLNPK QKLALAKQLN LKPRQVEVWF  180
QNRRARTKLK QTEVDCEYLK RCCENLTEEN RRLHKEVQEL RALKLSPQLY MHMKPPTTLT  240
MCPSCERVAA PGSSAVKRCQ TSPDRQQPVP VNPWAAMPIT HQPFNAPASR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138SRKKLRL
2182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8484811e-153GQ848481.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZip) mRNA, complete cds.
GenBankHM6377451e-153HM637745.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZ) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437528.10.0PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-111HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0D2RDC80.0A0A0D2RDC8_GOSRA; Uncharacterized protein
STRINGGorai.008G107900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-93homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]