PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G091100.2
Common NameB456_008G091100, LOC105763539
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32466.9 Da    PI: 4.4348
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G091100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192073356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Gorai.008G091100.2 20 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 73
                        566899***********************************************9 PP
2HD-ZIP_I/II127.17.5e-4119111193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk + ++L++ +e+L +e+
  Gorai.008G091100.2  19 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKLNFDTLQHGNEALLKEI 109
                         69*************************************************************************************9999 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Gorai.008G091100.2 110 RE 111
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.3461575IPR001356Homeobox domain
SuperFamilySSF466895.99E-191677IPR009057Homeodomain-like
SMARTSM003891.1E-171879IPR001356Homeobox domain
PfamPF000463.1E-162073IPR001356Homeobox domain
CDDcd000861.93E-162076No hitNo description
Gene3DG3DSA:1.10.10.608.1E-202281IPR009057Homeodomain-like
PRINTSPR000317.6E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000317.6E-65571IPR000047Helix-turn-helix motif
PfamPF021831.2E-1575116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLDGLEEEGC LEEAGHVAEK KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ  60
VAVWFQNRRA RWKTKQLERD YGLLKTSYET LKLNFDTLQH GNEALLKEIR ELKAKLNGES  120
VGSNLSVKEE AILPETDEKT MEQSEPLPAS SLATSSEPIE LNYECFNSSN NRVADAILFP  180
ELKDGSSDSD SSAILNEDDH TNTNNGVVSS SGVLQSQHLL MSPTTTSSFN FDSSSSSSPS  240
SMNCFQFSKT TYLVKMEEHN FFTADEACNF FSDEQAPSLQ WCYPEQWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.28331e-114flower|seedling| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270863e-61HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437230.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A0D2T2X30.0A0A0D2T2X3_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TZX40.0A0A0D2TZX4_GOSRA; Uncharacterized protein
STRINGGorai.008G091100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-64homeobox protein 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]