PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G089900.4

Common Name

B456_008G089900, LOC105763524

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 1047aa MW: 118044 Da PI: 6.5142

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G089900.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	139	1.5e-43	14	95	37	118
CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw+Lee+l++ivlvhy++vk Gorai.008G089900.4 14 GSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDVK 95 9******************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	7.5E-48	1	95	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	62.107	1	100	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.5E-36	14	94	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.1E-6	462	549	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.5E-6	463	548	IPR002909	IPT domain
SuperFamily	SSF81296	8.4E-19	463	549	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	16.52	647	758	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.59E-12	647	756	No hit	No description
SuperFamily	SSF48403	1.71E-14	648	759	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-14	648	759	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.217	697	729	IPR002110	Ankyrin repeat
SMART	SM00248	0.03	697	726	IPR002110	Ankyrin repeat
SMART	SM00248	1000	736	765	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	8.23E-9	867	922	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.016	871	893	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	873	892	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	873	901	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	894	916	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	895	919	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.1E-4	897	916	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MCCLSILLIL FLGGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHERL KAGSIDVLHC 60 YYAHGEENEN FQRRSYWMLE EDLSHIVLVH YRDVKGNRTN FNRLKETEGG IPYSQEAVGI 120 VPNSEVESSL SSNFLPNNSQ IPSQTMDTAS MNSVHVQASE YEDAESVSNH QASSQFHSFL 180 DSHQPVAGRA DTRFYDPYVH VSHSNNCYGK PSITAFQLTQ TDKDREYNVA GITYEPQKNL 240 DFTSWEDVLE NCDRGVESAQ YQPPFTLKQN DTVGLLFDNS FLKKQAFEDQ SHAQEEWQGY 300 EGDSSHIVKW SLDQKLHPDL RYDLTSKFDE EVNHNLHPEK QHDHYLLNNQ LTDPSKGDHE 360 YVPKPDSENY LTLEGKSVYS SAMRPHLFDG SLAEGLKKLD SFNRWMSKEL GDVDESHTHS 420 SSGAYWDEVE GQNGIDVSSI PSQEQLDTFM LGPSLSHDQL FSIIDFSPNW AYVGSEIKVL 480 ITGRFLKSQG HAENCKWSCM FGEVEVPAEV IADGVLRCHT PKHEAGRVPF YVTCSNRLAC 540 SEVREFEYRV SHILDIDTVD NPSSNAIKIL DMRFGRLLCL GSSSPASNTN SIADISQLSS 600 KINSLLKEDV EEWDQMLAHN LEEDFFLEKL KEQLLKKLLK EKLRVWLLQK IVEGGKGPSI 660 LDKGGQGVIH FASALGYDWA LEPTIVAGVS VNFRDVNGWN ALHWAASSGR ERTVASLISL 720 GAAPGALTDP TPEYPLGRTP ADLASANGHK GISGYLAECD LSSHLLSLNL DKQGSASTTD 780 SRPDVIQKIL ELKTAPLNYG DASDGPSLKD SLAAVRNATQ AAARIHQVFR VQSFQNRQLK 840 EYGNDKYGMS DERALSLLAV KSNKPGQHDE RVHAAAIRIQ NKFRGWKGRK EFLIIRQRIV 900 KIQAHVRGHQ VRKNYRKIVW SVGIVEKVIL RWRRKGSGLR GFKPETLTKG PSVSVPSKED 960 DYDFLKKGRK QTEERLQKAL ARVKSMALNP AGRDQYSRIK NVVTEIQEKV LYDKVLNFAG 1020 ETTDLDKDLI DLEKLLDEDT FMQTAP*

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MCCLSILLIL FLGGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHERL KAGSIDVLHC  60
YYAHGEENEN FQRRSYWMLE EDLSHIVLVH YRDVKGNRTN FNRLKETEGG IPYSQEAVGI  120
VPNSEVESSL SSNFLPNNSQ IPSQTMDTAS MNSVHVQASE YEDAESVSNH QASSQFHSFL  180
DSHQPVAGRA DTRFYDPYVH VSHSNNCYGK PSITAFQLTQ TDKDREYNVA GITYEPQKNL  240
DFTSWEDVLE NCDRGVESAQ YQPPFTLKQN DTVGLLFDNS FLKKQAFEDQ SHAQEEWQGY  300
EGDSSHIVKW SLDQKLHPDL RYDLTSKFDE EVNHNLHPEK QHDHYLLNNQ LTDPSKGDHE  360
YVPKPDSENY LTLEGKSVYS SAMRPHLFDG SLAEGLKKLD SFNRWMSKEL GDVDESHTHS  420
SSGAYWDEVE GQNGIDVSSI PSQEQLDTFM LGPSLSHDQL FSIIDFSPNW AYVGSEIKVL  480
ITGRFLKSQG HAENCKWSCM FGEVEVPAEV IADGVLRCHT PKHEAGRVPF YVTCSNRLAC  540
SEVREFEYRV SHILDIDTVD NPSSNAIKIL DMRFGRLLCL GSSSPASNTN SIADISQLSS  600
KINSLLKEDV EEWDQMLAHN LEEDFFLEKL KEQLLKKLLK EKLRVWLLQK IVEGGKGPSI  660
LDKGGQGVIH FASALGYDWA LEPTIVAGVS VNFRDVNGWN ALHWAASSGR ERTVASLISL  720
GAAPGALTDP TPEYPLGRTP ADLASANGHK GISGYLAECD LSSHLLSLNL DKQGSASTTD  780
SRPDVIQKIL ELKTAPLNYG DASDGPSLKD SLAAVRNATQ AAARIHQVFR VQSFQNRQLK  840
EYGNDKYGMS DERALSLLAV KSNKPGQHDE RVHAAAIRIQ NKFRGWKGRK EFLIIRQRIV  900
KIQAHVRGHQ VRKNYRKIVW SVGIVEKVIL RWRRKGSGLR GFKPETLTKG PSVSVPSKED  960
DYDFLKKGRK QTEERLQKAL ARVKSMALNP AGRDQYSRIK NVVTEIQEKV LYDKVLNFAG  1020
ETTDLDKDLI DLEKLLDEDT FMQTAP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434540	4e-39	AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437208.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Refseq	XP_012437209.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Refseq	XP_012437210.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Refseq	XP_012437211.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A0D2TZT6	0.0	A0A0D2TZT6_GOSRA; Uncharacterized protein
STRING	Gorai.008G089900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Gorai.008G089900.4
Entrez Gene	105763524

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]