PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G085300.1

Common Name

B456_008G085300, LOC105763474

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 185aa MW: 21354.3 Da PI: 11.2392

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G085300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	75	132	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rr+++NRe+ArrsR RK+ +e+L++ + L eN++L ++l l ++ +++++ Gorai.008G085300.1 75 RKRRRMISNRESARRSRMRKRNHLENLRNQANRLRIENRELTNRLRFLLYHCHRVRTD 132 5789**************************************9998887777776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-11	71	135	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-8	73	128	No hit	No description
PROSITE profile	PS50217	10.795	73	136	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	75	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-10	75	128	No hit	No description
CDD	cd14702	1.16E-16	76	127	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLSTVPAIIS SNPMIQSDPF PSLQSAWDCS QLFSNTQSVG PARSGSASIE PNQTQTHSNS 60 CLDESNQTLS IIDERKRRRM ISNRESARRS RMRKRNHLEN LRNQANRLRI ENRELTNRLR 120 FLLYHCHRVR TDNDRLRSES TVLRLKLSDM HQILLFKQLQ QFSSAWPCNN VTVMSEQIPP 180 PLII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	78	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437168.1	1e-131	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2PR62	1e-130	A0A0D2PR62_GOSRA; Uncharacterized protein
STRING	Gorai.008G085300.1	1e-131	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	4e-26	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Gorai.008G085300.1
Entrez Gene	105763474

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]