PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G085200.1

Common Name

B456_008G085200, LOC105763473

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 171aa MW: 19824.5 Da PI: 10.227

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G085200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.9	4.6e-13	61	119	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+++NRe+ArrsR RK++ +e+L++ v +L eN++L ++l l ++ ++++++ Gorai.008G085200.1 61 RKRRRMMSNRESARRSRMRKQKHLENLRNLVNQLRIENRELTSRLRFLLYHCHRVRTDN 119 6789*****************************************99988888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-12	57	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	59	122	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-10	61	111	No hit	No description
Pfam	PF00170	3.8E-10	61	118	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-9	61	134	No hit	No description
CDD	cd14702	2.07E-17	62	113	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSSTVPTMES LECDWDCSQL FSTIQSVGPA GSGSASSEPN QTHSNSGLDE SNLKLSIIEE 60 RKRRRMMSNR ESARRSRMRK QKHLENLRNL VNQLRIENRE LTSRLRFLLY HCHRVRTDNN 120 SLRSEYTVLR QKLSDMQQIL LFKQLQQFSS TWPYNNVPVM SEQTPPPLII *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	RKRRR
2	60	81	RKRRRMMSNRESARRSRMRKQK
3	73	80	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437167.1	1e-122	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2PQZ5	1e-121	A0A0D2PQZ5_GOSRA; Uncharacterized protein
STRING	Gorai.008G085200.1	1e-122	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	9e-28	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Gorai.008G085200.1
Entrez Gene	105763473

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]