PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G044700.1 | ||||||||
Common Name | B456_008G044700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 233aa MW: 26376.2 Da PI: 8.8179 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 74.5 | 1.6e-23 | 67 | 115 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rYkeC++NhAas+G +a+DGCgEf+ + + + CaACgCHR+FHR++ Gorai.008G044700.1 67 ICRYKECRRNHAASIGRYAIDGCGEFICC-----KDDVFMCAACGCHRSFHRKD 115 589*************************8.....3478**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-18 | 68 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-19 | 69 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.234 | 70 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-11 | 70 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 161 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.32E-14 | 162 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.665 | 166 | 230 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.9E-20 | 170 | 224 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00839 | 171 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQFFPFKEQF HLPNHPTNTA LLIINSLSLM EGETRNVVIK VEAESDVEPI SVQRCCSLVS 60 DQSNERICRY KECRRNHAAS IGRYAIDGCG EFICCKDDVF MCAACGCHRS FHRKDYLPPP 120 PQPKLMSSCL APLPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA KRTRLTVEQK 180 NKMMRFADKL GWRSQGHDDA EIRQFCEQVG ITKRVFVVWL NNNRRRSRKG SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-14 | 172 | 224 | 21 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588026 | 1e-146 | JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435639.1 | 1e-176 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A0D2R974 | 1e-174 | A0A0D2R974_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G044700.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18668 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-32 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G044700.1 |
Publications ? help Back to Top | |||
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