PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G038800.3 | ||||||||
Common Name | B456_008G038800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 28166.1 Da PI: 8.9932 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.8 | 1.7e-30 | 17 | 95 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +e+ewyfF++rd+k+ +g r+nr+t++gyWkatg+d++++s ++ +glkktLvfykgrap+g+ktdWvm+eyrl Gorai.008G038800.3 17 KIGEREWYFFVPRDRKHGNGGRPNRTTENGYWKATGSDRKIVSLsdPKRITGLKKTLVFYKGRAPRGNKTDWVMNEYRL 95 45789************************************997666777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.745 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-36 | 14 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-15 | 22 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSNSDVVLFF FFLGLSKIGE REWYFFVPRD RKHGNGGRPN RTTENGYWKA TGSDRKIVSL 60 SDPKRITGLK KTLVFYKGRA PRGNKTDWVM NEYRLPDGCS LPKDIVLCKI YRKATSLRVL 120 EQRAALEEEL EATNTTTSSP LSSLETISFR SPKEDLVPSI SETREFFKKE IEEEKEAMVE 180 EKKDIIAKEN KVSPASLQFP VGNEKLAELQ LPKIINDWTQ DQFWTQLNSP WFQNLTPYAN 240 ILNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 18 | 116 | 68 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 18 | 116 | 68 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 18 | 116 | 68 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 18 | 116 | 68 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 18 | 116 | 71 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 18 | 116 | 68 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 18 | 116 | 68 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914147 | 0.0 | JQ914147.1 Gossypium hirsutum NAC domain protein 16 (NAC16) mRNA, complete cds. | |||
GenBank | KC110646 | 0.0 | KC110646.1 Gossypium hirsutum NAC protein 11 (NAC11) mRNA, complete cds. | |||
GenBank | KJ451596 | 0.0 | KJ451596.1 Gossypium hirsutum isolate CCRI10-N36 NAC domain protein 78 (NAC78) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436419.1 | 1e-169 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Swissprot | Q10S65 | 5e-68 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D2R8V8 | 1e-179 | A0A0D2R8V8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G038800.1 | 1e-168 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-75 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G038800.3 |
Publications ? help Back to Top | |||
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