PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G014700.2

Common Name

B456_008G014700, LOC105762712

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 198aa MW: 22675.3 Da PI: 4.6788

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G014700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.9	1.3e-38	9	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e ++wyf+s+r + +r+t +gyWk g +++ Gorai.008G014700.2 9 LPPGFRFCPTDEELVVHFLQRKAALLPCHP-DVIPDLELYPHDPWELDGKALGEGNQWYFYSRRTQ--------KRITGNGYWKPMGIEED 90 79***********************999.99**********977778899**9865........699********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+++++++vg+kk Lvfy g+ p + kt+W+m+eyrl Gorai.008G014700.2 91 VINSRSKKVGMKKYLVFYIGEGPAAIKTNWIMQEYRL 127 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-48	6	157	IPR003441	NAC domain
PROSITE profile	PS51005	44.947	9	158	IPR003441	NAC domain
Pfam	PF02365	2.8E-23	10	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGENSSVNLP PGFRFCPTDE ELVVHFLQRK AALLPCHPDV IPDLELYPHD PWELDGKALG 60 EGNQWYFYSR RTQKRITGNG YWKPMGIEED VINSRSKKVG MKKYLVFYIG EGPAAIKTNW 120 IMQEYRLSKS DSSSTKSSKR RGHSKDYSKW VVCRVYERNC SEDEDDGDDD DDGTQLSCLD 180 EVFLSLDDMD EISLPFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	5	164	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	5	164	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	5	164	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	5	164	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	5	164	16	174	NAC domain-containing protein 19
3swm_B	1e-41	5	164	16	174	NAC domain-containing protein 19
3swm_C	1e-41	5	164	16	174	NAC domain-containing protein 19
3swm_D	1e-41	5	164	16	174	NAC domain-containing protein 19
3swp_A	1e-41	5	164	16	174	NAC domain-containing protein 19
3swp_B	1e-41	5	164	16	174	NAC domain-containing protein 19
3swp_C	1e-41	5	164	16	174	NAC domain-containing protein 19
3swp_D	1e-41	5	164	16	174	NAC domain-containing protein 19
4dul_A	1e-41	5	164	13	171	NAC domain-containing protein 19
4dul_B	1e-41	5	164	13	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847241	0.0	KC847241.1 Gossypium hirsutum NAC domain protein NAC64 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436014.1	1e-146	PREDICTED: NAC transcription factor 25-like isoform X2
Swissprot	Q8GWK6	6e-86	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D2SSZ0	1e-145	A0A0D2SSZ0_GOSRA; Uncharacterized protein
STRING	Gorai.008G014700.1	1e-124	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	9e-79	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Gorai.008G014700.2
Entrez Gene	105762712

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]