PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G363700.1 | ||||||||
Common Name | B456_007G363700, LOC105801660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 324aa MW: 35844.6 Da PI: 6.2358 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.5 | 6.1e-17 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+s r+v++ kRr g++KK +EL +LC++++++ii+s++ Gorai.007G363700.1 11 ISNDSARKVSLEKRRLGLMKKMNELTTLCGIRACLIIYSPNE 52 9**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.61 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.85E-27 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-22 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MTRKKVTLAW ISNDSARKVS LEKRRLGLMK KMNELTTLCG IRACLIIYSP NESEPMVWPS 60 HAEVQLQLEE YWKTSELDRL KKMVNQETYL KERITKAKEQ LGKLQRKNNE VEMGHLMHQI 120 EQGKGIDEFN NGELHGLIRL VEEKMDEIKK RIEFFHQLPH GDLTAQTVGG GHKPLMMNQR 180 FTNMVNNNEH TFGDIVAQDH LGLLPGHKLG GNSDVGVPLY GDLRGTTTDM GQQLLGFRPY 240 GDGATEMGLP HGSTIGSNNI FGAFGNDIGM GGHPFECIGS SYNVSEQGVA WPLGGDGGEN 300 CGGTSNGIDM QFDGQSWPDN FSA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488326.1 | 0.0 | PREDICTED: MADS-box transcription factor PHERES 1-like | ||||
TrEMBL | A0A0D2SQC2 | 0.0 | A0A0D2SQC2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G363700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-35 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G363700.1 |
Entrez Gene | 105801660 |
Publications ? help Back to Top | |||
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