PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G360800.1
Common NameB456_007G360800, LOC105761657
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29204.6 Da    PI: 6.1892
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G360800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.9e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien   rqvtfskRrng+lKKA+ELS+LCdaev viifsstgk+y +ss
  Gorai.007G360800.1  9 KKIENLNSRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKVYQWSS 59
                        68***********************************************96 PP
2K-box516.4e-18821758100
               K-box   8 sleeakaeslq.qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           +e++ e+lq  e++ +k+e+  L +   +l G++L++Ls+keL+qLe+qL++++ ++ ++K+++l+eq+++++ +e+++  en++Lrk+
  Gorai.007G360800.1  82 PFDEQQVEQLQgIEVNTMKQEYLRLHTAYMRLNGKELDDLSFKELKQLENQLNEGIASVEQQKEQILMEQLKRSRLQEQKTIMENEDLRKQ 172
                         35666677776359***************************************************************************** PP

               K-box  98 lee 100
                         +ee
  Gorai.007G360800.1 173 VEE 175
                         987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.707161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.17E-40278No hitNo description
SuperFamilySSF554552.49E-32281IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.72289179IPR002487Transcription factor, K-box
PfamPF014865.9E-1389173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSILCD AEVGVIIFSS TGKVYQWSST  60
SMEHTLSRYN KGMEEDHSQE HPFDEQQVEQ LQGIEVNTMK QEYLRLHTAY MRLNGKELDD  120
LSFKELKQLE NQLNEGIASV EQQKEQILME QLKRSRLQEQ KTIMENEDLR KQVEEMRQKR  180
SSSIIELNPL LERRLDHSPN NSKADDNNSA SDDDNHLSDT SLHLGLTSNV RRKRKATEIE  240
STTNDSGSQV ASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21169169MEF2C
5f28_B3e-21169169MEF2C
5f28_C3e-21169169MEF2C
5f28_D3e-21169169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}.
UniprotTISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5853718e-34JX585371.1 Gossypium hirsutum clone NBRI_GE18912 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434983.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K83e-69AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A0D2SQ800.0A0A0D2SQ80_GOSRA; Uncharacterized protein
STRINGGorai.007G360800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-65AGAMOUS-like 18
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]