PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G348600.1
Common NameB456_007G348600, LOC105761529
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 333aa    MW: 37399.1 Da    PI: 7.0113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G348600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l+d+++++G g+W++ ++  g++R++k+c++rw +yl
  Gorai.007G348600.1 16 KGPWTPEEDRILIDYIQKHGHGSWRALPNLAGLNRCGKSCRLRWTNYL 63
                        79********************************************97 PP
2Myb_DNA-binding54.92e-1769114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ eE++ ++++++ lG++ W++Ia +++ gRt++++k++w++++
  Gorai.007G348600.1  69 RGKFSDEEEQTIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHM 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3821163IPR017930Myb domain
SuperFamilySSF466891.58E-3113110IPR009057Homeodomain-like
SMARTSM007171.3E-151565IPR001005SANT/Myb domain
PfamPF002492.0E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-251770IPR009057Homeodomain-like
CDDcd001672.31E-121863No hitNo description
PROSITE profilePS5129426.9164118IPR017930Myb domain
SMARTSM007175.3E-1668116IPR001005SANT/Myb domain
PfamPF002495.4E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2771118IPR009057Homeodomain-like
CDDcd001676.00E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMVRPPSGND ENGVKKGPWT PEEDRILIDY IQKHGHGSWR ALPNLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQTI INLHAVLGNK WSAIATHLPG RTDNEIKNFW NTHMRKKLLQ  120
MGIDPVTHRP RTDHLNVLAS LPQLLAAANF NNMNNLLDVN ALNRLQLDAA TLAKLHLLHN  180
MLQILGTPAI NAMDFLSGPT FRENHQLYHL QPNTGEYQPS NLIEASQNTH PLKDLKFSSY  240
INNDRFASSL FVANNNIPSS SIPQLPALIP ASPEHRPAVV ENNKINNPNE ISNPSSTSTT  300
FEAWGDLMDD EASDSYWRDI IDQASSQSWP IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434825.10.0PREDICTED: transcription factor MYB39-like isoform X1
RefseqXP_016686209.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z26e-86MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D2TRP40.0A0A0D2TRP4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JD890.0A0A1U8JD89_GOSHI; transcription factor MYB39-like
STRINGGorai.007G348600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-104myb domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]