PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G325700.1

Common Name

B456_007G325700, LOC105801639

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 281aa MW: 31510.3 Da PI: 5.2171

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G325700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.1e-11	151	199	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr +r NR +A+rsR RK+++i eLe+ v +L++e ++L ++ l Gorai.007G325700.1 151 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSTLSPRVAFLD 199 899***********************************99987776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-15	147	211	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.875	149	212	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-10	151	195	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.1E-14	151	203	No hit	No description
SuperFamily	SSF57959	5.63E-12	151	205	No hit	No description
CDD	cd14703	1.78E-22	152	202	No hit	No description
PROSITE pattern	PS00036	0	154	169	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MPTMANFISS STTSTMMKDS NHQPSWADEF LDFSSMRRGA KRRSMSDFIA FLDQPLEEEN 60 RAGNAMMMEP NMFDRLDDEQ LKSMFSDDVS LTLPATTMGS SSSTPLMSDQ NSNNDEKPTP 120 GEVESSYKLN ETQASEPPST SNGGDPITDP KRVKRILANR QSAQRSRVRK LQYISELERS 180 VTTLQTEVST LSPRVAFLDH QRVVLTVENS ALKQRIAALA QDKIFKDAHQ EALKKEIERL 240 TQVYQQQQSL KNMNDNHPPP PPQQQQPLLP PPPNEGQLIS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488308.1	0.0	PREDICTED: basic leucine zipper 34-like
Swissprot	Q9M2K4	3e-80	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A0D2TQI1	0.0	A0A0D2TQI1_GOSRA; Uncharacterized protein
STRING	Gorai.007G325700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-82	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G325700.1
Entrez Gene	105801639

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]