PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G312700.1
Common NameB456_007G312700, LOC105761179
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 483aa    MW: 53954.2 Da    PI: 7.7655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G312700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-134592148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  l+ +v+++G g+W+++ +  g+ R++k+c++rw ++l
  Gorai.007G312700.1 45 KGPWTATEDAVLAGYVRRHGEGNWNAVRKNTGLARCGKSCRLRWANHL 92
                        79******************************************9986 PP
2Myb_DNA-binding48.91.5e-1598141146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ +++++++++G++ W++ a  ++ gRt++++k++w++
  Gorai.007G312700.1  98 KGSFSPEEERIIIELHAKMGNR-WARMATQLP-GRTDNEIKNYWNT 141
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3994092IPR017930Myb domain
SMARTSM007179.2E-104494IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-2844139IPR009057Homeodomain-like
PfamPF002499.2E-134592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-224699IPR009057Homeodomain-like
CDDcd001671.75E-84792No hitNo description
PROSITE profilePS5129425.72893147IPR017930Myb domain
SMARTSM007171.3E-1697145IPR001005SANT/Myb domain
PfamPF002491.2E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-25100146IPR009057Homeodomain-like
CDDcd001675.30E-12100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MMMMMMMREN NQFAAQNEGG GSLGNNGRNN GGVGVGREGE IVLKKGPWTA TEDAVLAGYV  60
RRHGEGNWNA VRKNTGLARC GKSCRLRWAN HLRPNLKKGS FSPEEERIII ELHAKMGNRW  120
ARMATQLPGR TDNEIKNYWN TRVKRRQRQG LPLYPPDVQP HYSEHQHRQR HSHPSSPIPS  180
PPPTTEPNSC FSFQTPIVSP HTSNPMPLHP LHIPHRPPPQ NFLYNPHSAL TTPPPPLQSP  240
NSASTPAPLP SPNASTPPHI SPLYSPHNPP PFPTLPLFDY PNITTDDDFF HSNKRFKHDG  300
LQSNNYYNNH LDATSSSFTL PFSPMQHYSN GMTLDLPSSS RTAFNQDSGC FYPLKTDLRS  360
NQINYDGMLE NILQEARELA ANGRGGNKEM PKEMMNSAQN EEEDYSRLIN IDGLSSLGMA  420
IPEWCNDSGE SSERQPSVIT DNENHLALDM HQIASLYPAD ISPNHAARSS SVRSWDKFPG  480
LC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30431465107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162601e-77JX616260.1 Gossypium hirsutum clone NBRI_GE60774 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434369.10.0PREDICTED: myb-like protein A
TrEMBLA0A0D2PHT80.0A0A0D2PHT8_GOSRA; Uncharacterized protein
STRINGGorai.007G312700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-69myb domain protein 101
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]