PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G287800.1

Common Name

B456_007G287800, LOC105804748

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 288aa MW: 31462.6 Da PI: 8.478

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G287800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.3	1.8e-17	214	248	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l Gorai.007G287800.1 214 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 248 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	5.3E-14	207	245	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.569	208	244	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.9E-14	208	262	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-15	209	272	No hit	No description
CDD	cd00202	1.57E-11	213	260	No hit	No description
Pfam	PF00320	3.4E-15	214	248	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	214	239	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDFLRNVSVS GEYHQPEQVL SSPCSKLGAS IDDLFPTQNT EVDVSLEWLS IFVEDCLSST 60 GNCIPVAATA APNVTTTATT TTKPTNSAKK PHQITPPSLQ KIVVPGKARS KRKRVSTTLS 120 KTKNNPFCSW YQSLQLPNSD PLLLQQSCWL ADSELIMPKK EDDSSSGMVG YSEVEESTKR 180 EGMEEEKAAA AAVSKESIGD GNNNGVNQQQ PRRCSHCLAQ RTPQWRAGPL GPKTLCNACG 240 VRYKSGRLLP EYRPAKSPTF VSYLHSNSHK KVMEMRMSLL SSIPSEQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093501	2e-59	BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492940.1	0.0	PREDICTED: GATA transcription factor 5-like
TrEMBL	A0A0D2R146	0.0	A0A0D2R146_GOSRA; Uncharacterized protein
STRING	Gorai.007G287800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17095	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	5e-35	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Gorai.007G287800.1
Entrez Gene	105804748

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]