PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G274700.8
Common NameB456_007G274700, LOC105804607
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 419aa    MW: 46103.3 Da    PI: 5.9961
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G274700.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.63.4e-34195249155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+
  Gorai.007G274700.8 195 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 249
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.615192252IPR017930Myb domain
SuperFamilySSF466891.79E-19193249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-31194250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25195249IPR006447Myb domain, plants
PfamPF002499.4E-11197248IPR001005SANT/Myb domain
PfamPF143792.0E-23282326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MENSASLQES SLAPSNGTLG NSSLSPSIVT DHMCASALPH VQYSHNPAFI SQSSRDLASL  60
PPLGASFSQS TASLIHTQGN KDVSWSLDRL QMFLDLPENT PAPNQLVESS TGVLASEDHN  120
KKTNWQEWAD DLINVVDPDW SKILDNTNVL NPRVEVPKPS GDISKQQPQF HQNQLVPHGE  180
FSSHAYPSST APPTKPRMRW TPELHEAFLE AVNQLGGSER ATPKGILKLM NVEGLTIYHV  240
KSHLQKYRTA RYMPETSEGT SEKRITSIEE MKSIDLKTSI GITEALRLQV EVQKQLHEQL  300
EIQRNLQLRI EEQGRYLQMM FEKQKKVEDE KGGVPSSASD DLLAPLPGSK HPPCNNGKSD  360
SEALEQDHSR TGIGPGNAGT NEDKSSSGVS TKQKMLETES TVHDESGFSV SKRARTEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14590.0flower| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492739.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_012492740.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A0D2TME40.0A0A0D2TME4_GOSRA; Uncharacterized protein
STRINGGorai.007G274700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.21e-92G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]