PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G274700.4
Common NameB456_007G274700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 381aa    MW: 41928.7 Da    PI: 6.1568
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G274700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.9e-34157211155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+
  Gorai.007G274700.4 157 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 211
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.615154214IPR017930Myb domain
SuperFamilySSF466891.61E-19155211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-31156212IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25157211IPR006447Myb domain, plants
PfamPF002498.2E-11159210IPR001005SANT/Myb domain
PfamPF143791.7E-23244288IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MENSASLQES SLAPSNGTLG NSSLSPSIVT DHMCASALPH VQYSHNPAFI SQSSRDLASL  60
PPLAPNQLVE SSTGVLASED HNKKTNWQEW ADDLINVVDP DWSKILDNTN VLNPRVEVPK  120
PSGDISKQQP QFHQNQLVPH GEFSSHAYPS STAPPTKPRM RWTPELHEAF LEAVNQLGGS  180
ERATPKGILK LMNVEGLTIY HVKSHLQKYR TARYMPETSE GTSEKRITSI EEMKSIDLKT  240
SIGITEALRL QVEVQKQLHE QLEIQRNLQL RIEEQGRYLQ MMFEKQKKVE DEKGGVPSSA  300
SDDLLAPLPG SKHPPCNNGK SDSEALEQDH SRTGIGPGNA GTNEDKSSSG VSTKQKMLET  360
ESTVHDESGF SVSKRARTEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-30157214259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14590.0flower| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492739.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_012492740.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN54e-86PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0D2R0580.0A0A0D2R058_GOSRA; Uncharacterized protein
TrEMBLA0A0D2SRX70.0A0A0D2SRX7_GOSRA; Uncharacterized protein
STRINGGorai.007G274700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.37e-89G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  5. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]