PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G267900.1
Common NameB456_007G267900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 387aa    MW: 43406 Da    PI: 8.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G267900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63.1e-50101711128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..........................kvkaeekewyfFskr 64 
                         lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp +                          k++ +ekewyfFs+r
  Gorai.007G267900.1  10 LPPGFRFHPTDEELILHYLKKKITSSPFPV-SIIADVDIYKFDPWDLPgQnpfsclsschvskllffnvvffflsdKAAFGEKEWYFFSPR 99 
                         79****************************.89**************95489*************999999998876666999******** PP

                 NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         d+ky++g r+nra++sgyWkatg+dk ++++         +e++g+kk Lvfykgr pkg kt+W+mheyrl
  Gorai.007G267900.1 100 DRKYPNGARPNRAAASGYWKATGTDKVIVTSsmadrrgeVQENIGVKKALVFYKGRPPKGMKTNWIMHEYRL 171
                         *****************************98787776554555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-21462IPR003441NAC domain
PROSITE profilePS5100558.43210204IPR003441NAC domain
PfamPF023652.0E-2711171IPR003441NAC domain
SuperFamilySSF1019411.83E-3782204IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNMKHPQSSL PPGFRFHPTD EELILHYLKK KITSSPFPVS IIADVDIYKF DPWDLPGQNP  60
FSCLSSCHVS KLLFFNVVFF FLSDKAAFGE KEWYFFSPRD RKYPNGARPN RAAASGYWKA  120
TGTDKVIVTS SMADRRGEVQ ENIGVKKALV FYKGRPPKGM KTNWIMHEYR LADNPNSNFN  180
NRPLKSKDSS MRLDDWVLCR IYKKSNALSS TTAIGAATSD QDLEEEEAEQ FIKDALLPAA  240
IKSPPTTNAL LPQKSCSFSN LLDAMDYSML SSFLADNQCN GSGYDPTSFT CEQPLVNNYT  300
IGNNSSSSSS MMVQKLPQLS PSVPNMENKL KRQYSSIDED HPSKKLNSSC SYSNSSSQSD  360
MTHYTFLNQS LFNQSLLLSP HIQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-67720714168NO APICAL MERISTEM PROTEIN
1ut4_B3e-67720714168NO APICAL MERISTEM PROTEIN
1ut7_A3e-67720714168NO APICAL MERISTEM PROTEIN
1ut7_B3e-67720714168NO APICAL MERISTEM PROTEIN
3swm_A3e-67720717171NAC domain-containing protein 19
3swm_B3e-67720717171NAC domain-containing protein 19
3swm_C3e-67720717171NAC domain-containing protein 19
3swm_D3e-67720717171NAC domain-containing protein 19
3swp_A3e-67720717171NAC domain-containing protein 19
3swp_B3e-67720717171NAC domain-containing protein 19
3swp_C3e-67720717171NAC domain-containing protein 19
3swp_D3e-67720717171NAC domain-containing protein 19
4dul_A3e-67720714168NAC domain-containing protein 19
4dul_B3e-67720714168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7063430.0EU706343.1 Gossypium hirsutum NAC domain protein NAC5 (NAC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492658.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD61e-113NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0D2PFA40.0A0A0D2PFA4_GOSRA; Uncharacterized protein
STRINGGorai.007G267900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-105NAC domain containing protein 47
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]