PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G243200.1 | ||||||||
Common Name | B456_007G243200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 421aa MW: 47582.6 Da PI: 8.3603 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.5 | 1e-11 | 133 | 173 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k +rr+++NReAAr+sR+RKka++++Le+ +L + ++ Gorai.007G243200.1 133 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLIQLEQE 173 689**************************976666655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 129 | 179 | No hit | No description |
SMART | SM00338 | 1.8E-8 | 130 | 193 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.875 | 132 | 176 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.0E-8 | 134 | 166 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-7 | 134 | 176 | No hit | No description |
CDD | cd14708 | 1.38E-22 | 134 | 186 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 137 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.6E-29 | 220 | 295 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MMHHFEHAFC SYKYCLTKQN IKFSLDPIWF VLHSKLSIAL DINSTCAKVA FVIISKSMNS 60 PTPQFVPSRL SIYEPIHQIG IWGENFKRNG NPNTSTSLIV EVDNKLENES ETTSHEMLAP 120 TNNYEQEASK PIDKIQRRLA QNREAARKSR LRKKAYVQQL ENSRLKLIQL EQELQRATQQ 180 GLYMGGVLEG SHIGFSGTVN SGIAAFEMEY GRWVDVQHRQ ICELRTALNA HISDIELRIL 240 VKSGMGHYFE LFRMKSTVAK ADVFYVISGV WKTSAERFFS WIGGFRPSEL LKVLVPQLDP 300 LTEQQILEVC NLKQSCQQAE DALSQGLEKL QETVSSTVAG GPVAEVSYIP QVATAMEKLE 360 ALVSFVNQAD HLRQETLQQM SRILTTRQAA RGLLALGEYF HRLRALSTLW VTRPPEPSLP 420 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492248.1 | 0.0 | PREDICTED: transcription factor TGA1-like isoform X2 | ||||
Swissprot | Q39237 | 0.0 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A0D2PEC4 | 0.0 | A0A0D2PEC4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G243200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G243200.1 |