PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G235200.2

Common Name

B456_007G235200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32372.1 Da PI: 6.072

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G235200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	38	91	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ ++ +LA++lgL rqV vWFqNrRa++k Gorai.007G235200.2 38 KKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWK 91 5568999**********************************************9 PP
2	HD-ZIP_I/II	123.8	8.2e-40	37	129	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qvk+LE+ Fe e+kL+p rK +la++Lgl+prqvavWFqnrRAR+ktkqlEkdy Lk++y++lk + ++L+++++ L +++ Gorai.007G235200.2 37 EKKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWKTKQLEKDYGLLKNRYETLKLNYDSLQHDNQVLLKQI 127 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Gorai.007G235200.2 128 EE 129 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.552	33	93	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.05E-18	35	95	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-17	36	97	IPR001356	Homeobox domain
CDD	cd00086	1.78E-14	38	94	No hit	No description
Pfam	PF00046	7.1E-16	38	91	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-19	40	100	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.4E-14	93	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MKRVGSSHSL GAMMSICPIS DGLDEEEGVE ESGYVAEKKR RLNVDQVKAL EKDFEVENKL 60 DPGRKLKLAQ QLGLRPRQVA VWFQNRRARW KTKQLEKDYG LLKNRYETLK LNYDSLQHDN 120 QVLLKQIEEV KAKLNGKNNV SVKEEVNVTK TANRTLEQSE APVEVKYESL KNNSKGSNGA 180 ILFLDLKDGS SDSDSSAVLN EDNNNGSNYV GGSSSGILQS QHVWMSPTTA SSLNFNSSSS 240 SSSMKCFQPQ QFVKMEEQNF FSADEACKFF SDEEAPSLHW YCPEHWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	93	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492121.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_012492122.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0D2QY62	0.0	A0A0D2QY62_GOSRA; Uncharacterized protein
STRING	Gorai.007G235200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	8e-56	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Gorai.007G235200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]