PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G229700.1 | ||||||||
Common Name | B456_007G229700, LOC105804099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 172aa MW: 19449.1 Da PI: 8.6243 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.2 | 4.4e-16 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ F +++ e++ +L ++lgL+ rqV +WFqNr a++k Gorai.007G229700.1 61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWK 114 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 104.8 | 7.1e-34 | 60 | 131 | 1 | 72 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 ekkrrls +qvk+LE++F+ +kLeperKv+l +eLglqprqva+WFqnr AR+ktk lEkdy++Lk++ ++ Gorai.007G229700.1 60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWKTKVLEKDYAMLKANREK 131 69*****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.34E-16 | 48 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.37 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-14 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.56E-13 | 61 | 116 | No hit | No description |
Pfam | PF00046 | 2.4E-13 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-17 | 63 | 123 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKRLSPSPSL DAFMSTSQPK VDYAEEKSSK KHQIYSKEFQ AMLDGLDAED SLEEGGQATE 60 KKRRLSMHQV KALEKNFDVG NKLEPERKVK LVEELGLQPR QVAIWFQNRC ARWKTKVLEK 120 DYAMLKANRE KEPPRNCSNC LHSPSDNRQL SGDDCPLVPP KSSPEMTVNG S* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243121 | 1e-177 | AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492050.1 | 1e-125 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
Swissprot | Q940J1 | 2e-36 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A0D2SLR7 | 1e-124 | A0A0D2SLR7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G229700.1 | 1e-124 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 9e-39 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G229700.1 |
Entrez Gene | 105804099 |
Publications ? help Back to Top | |||
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