PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G228000.1
Common NameB456_007G228000, LOC105804079
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31123.2 Da    PI: 8.6401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G228000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-19136190256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Gorai.007G228000.1 136 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 190
                         788899***********************************************98 PP
2HD-ZIP_I/II124.74.3e-40136225191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k+q++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Gorai.007G228000.1 136 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 225
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.329132192IPR001356Homeobox domain
SMARTSM003896.2E-16134196IPR001356Homeobox domain
SuperFamilySSF466891.92E-18134200IPR009057Homeodomain-like
PfamPF000461.9E-16136190IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-18136190IPR009057Homeodomain-like
CDDcd000861.72E-17136193No hitNo description
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
SMARTSM003405.7E-26192235IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-10192226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGIDDACNTG LVLGLGFSST LGTPSKANNN QTPKKSSMSM AAASVEPSLT LALSGEIYLV  60
NDNSKKIDVN KGVGCLHNHE EPGSGDLYRQ ASPHSAVSSF SSGRVKRERD LSCEEVEVEK  120
NSSRVSEEDE DGVNARKKLR LTKDQSALLE ESFKQHSTLN PKQKQALAKQ LNLRPRQVEV  180
WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLAQP FYMHMPAATL  240
TMCPSCERIG GVSDGSSKNP FSVLPSKPHF YNRFTNPSAA C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.32960.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1347930.0HM134793.1 Gossypium hirsutum homeodomain-leucine zipper protein HD4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492030.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-108HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2SIG90.0A0A0D2SIG9_GOSRA; Uncharacterized protein
STRINGGorai.007G228000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-96HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]