PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G209200.2
Common NameB456_007G209200, LOC105803868
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 494aa    MW: 55932.2 Da    PI: 9.0743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G209200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-161221981386
                         T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86 
                         +   ++l++pk+f +++ ++  ++ +++l d+sg++W+ +++        +     + l +GW  Fv++n+L++gD++ F+l++
  Gorai.007G209200.2 122 HskvSCLSIPKEFSRKYLMD--QG-DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELID 198
                         4445669**********656..22.7***************66541....22245577889********************875 PP
2B358.99.1e-19269365197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW  ++    +s +     + +GW+ Fv++n+Lk+gD++vF+l++++
  Gorai.007G209200.2 269 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELVSDT 356
                         67788888888887.***********888899999***************33..333334677889*********************9988 PP

                         EE..EEEEE CS
                  B3  89 efelvvkvf 97 
                         + + +v +f
  Gorai.007G209200.2 357 QISVKVIIF 365
                         877777666 PP
3B340.74.2e-13405487995
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +  k++++ +p +f+e++ +++ ++  l+l +   r+W v+++ + + +   lt+GW +F+++n L+egD++v +ld  ++  l+v+
  Gorai.007G209200.2 405 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVDNNLLKVS 487
                         44.45559**********7675564..554.4477*******77777777*************************987666556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.447146IPR003340B3 DNA binding domain
CDDcd100171.28E-7244No hitNo description
SuperFamilySSF1019362.16E-10353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-10555IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-20102210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-20105210IPR015300DNA-binding pseudobarrel domain
CDDcd100176.55E-20108210No hitNo description
SMARTSM010191.0E-9110212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437113212IPR003340B3 DNA binding domain
PfamPF023624.1E-14125198IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-22262362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-24262363IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-18267363No hitNo description
PROSITE profilePS5086312.971268368IPR003340B3 DNA binding domain
PfamPF023627.3E-17269366IPR003340B3 DNA binding domain
SMARTSM010195.6E-14269368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16392489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-13395486IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984396492IPR003340B3 DNA binding domain
CDDcd100177.50E-15396490No hitNo description
SMARTSM010196.3E-10397492IPR003340B3 DNA binding domain
PfamPF023621.5E-10405487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKLDGKLWVQ NGWRKFTEHY SLELGHFLVF RYQRNCRFHV LIFDRSASEI HYPYANNIST  60
DMTKKPVLQC PRPPKIMRAS NNGFSATKGN EKSKALERAS SAIKSGNPFF LVFMQPTYVG  120
LHSKVSCLSI PKEFSRKYLM DQGDVILCDS SGNTWSAQYR ATLGMNGQPY VKLLNGWDAF  180
VRDNNLQVGD VCAFELIDCI DISFQVVIYS SKKADFHGSP AQMEAGMTLT RSECLEPVKA  240
RETAFHREMK VREKALQRAL AFTSENPFFV VVLRPSYVQS HALCISNDFT RKHFKTTLTN  300
IGIALRLSNG KSWPAEYHQR SIGNPNARIC NGWRAFVNDN KLKVGDVCVF ELVSDTQISV  360
KVIIFQAIAD EDSHPSQGAS EEALGLTSQS AKAPLIFRRV VLPLHLKEDC VDIPFRFVEQ  420
YFEPNVQKLI LQVADRTWPV EITSNPRIRI AKLTSGWIKF ARENSLREGD ICVYELDTVD  480
NNLLKVSISK YAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491740.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X3
TrEMBLA0A0D2SHA00.0A0A0D2SHA0_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TIU70.0A0A0D2TIU7_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.007G209200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-16B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]