PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G194400.1

Common Name

B456_007G194400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 275aa MW: 30331.8 Da PI: 5.078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G194400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	10	59	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL +l ++ +K++K++iL +++ +k+L Gorai.007G194400.1 10 RKVQKADREKLRRDKLNEQFVELGNMLDPD----RPKNDKVTILVDTTQMLKDL 59 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.652	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.62E-7	10	63	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-11	10	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-7	10	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-12	10	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-5	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEANDPIAAR KVQKADREKL RRDKLNEQFV ELGNMLDPDR PKNDKVTILV DTTQMLKDLT 60 VEVNRLRAEC SSLTEESREL SQEKNELREE KASLKADIEN LNIQYQQRLS VMFPWTGIEP 120 SVVVAPPYSY PAPLHVPTGP IAMHPSLQPY PYFLNHGPGA VANPCSTYIP YSMEQPSSQP 180 TSSSHLSFQR DCRGKPMDDQ GGSNRDSCDG SNDVVTELEL KIPGSSTNQG LSAGETKGKQ 240 TEERSMVNGI TSSRSQGPHD SASNNLDEVS KSNK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016696640.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	2e-67	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0D2SMW6	0.0	A0A0D2SMW6_GOSRA; Uncharacterized protein
STRING	Gorai.007G194400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G194400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]