PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G144400.1 | ||||||||
Common Name | B456_007G144400, LOC105801486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22254.3 Da PI: 8.0576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 8.5e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasn +kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l Gorai.007G144400.1 9 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNASKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYL 99 7*************************99*************************************************************** PP DUF260 91 kaelallkee 100 + +l ++k++ Gorai.007G144400.1 100 QGQLMQMKAQ 109 **99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.659 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-37 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MASSGTGSPC GACKFLRRKC ASDCIFAPYF CSEQGPARFA AIHKVFGASN ASKLLLHIPA 60 HDRCEAVVTI AYEAQARIRD PVYGCVAHIF ALQQQVAYLQ GQLMQMKAQL AQNAMNSHNM 120 ESQWQGNLSG GPSIPTYPIY MNPISPQSSL ESVELNSADN LNMQEIQSRE EFSNFHGYSR 180 KRPYNSDLGE LQALALRMMR N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 3 | 114 | 5 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 3 | 114 | 5 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488224.1 | 1e-150 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-78 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0D2P8Y0 | 1e-149 | A0A0D2P8Y0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G144400.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-81 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G144400.1 |
Entrez Gene | 105801486 |