PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G141500.2
Common NameB456_007G141500, LOC105803153
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 425aa    MW: 45726.6 Da    PI: 5.9139
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G141500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.6e-14209265359
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         + kr+rr+ +NRe+ArrsR+RK+a++ eLe  v +L  e ++L k+l +++ ++++ 
  Gorai.007G141500.2 209 DAKRARRMRSNRESARRSRRRKQAQLNELEAQVGQLRVEHSTLLKRLTNMNHKYDEA 265
                         68******************************************9999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-10206261No hitNo description
SMARTSM003382.7E-16207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.047209264IPR004827Basic-leucine zipper domain
PfamPF001701.1E-11210263IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-9211261No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
PfamPF124983.6E-25278398IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNTVFSVDDF SDSFWAAPAS DDALGMTRSH SEWALERFLE EFSGAGVAIS GSHAGENVIG  60
PSLMAPQSSV SKVEEGDVVE IKRPNSQNHN HPPSDQTPTV PTASDDYHTI LKSKLELECA  120
AALAVKAEDS SAEAENHGLP SGSKVQGSSK VQGQGETDVA HCGTLTGSTT QKKSGVQVRQ  180
ATSGSSREDS DSDELEGDTE TADNMDPADA KRARRMRSNR ESARRSRRRK QAQLNELEAQ  240
VGQLRVEHST LLKRLTNMNH KYDEAAVDNR IMKADIETLR AKVKMAEETV KRVTGFNPAL  300
LSRPNVPSVG MPFVSNPLEA STVAPLPFQS NANQFFNQPV PNIVASIHHQ RVDNSFRGNT  360
LVPPDVNSQT KGVKNVNETS VLQHGPSLDC VPDQIGPGVS PCGPMPGWEP GLLPHAGDRN  420
NKQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223230RRSRRRKQ
2225230SRRRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5773032e-35JX577303.1 Gossypium hirsutum clone NBRI_GE9096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490637.10.0PREDICTED: basic leucine zipper 25 isoform X2
SwissprotQ9M1G61e-68BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A0D2SD130.0A0A0D2SD13_GOSRA; Uncharacterized protein
STRINGGorai.007G141500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.12e-63basic leucine zipper 25
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]