PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G141500.1
Common NameB456_007G141500, LOC105803153
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 430aa    MW: 46253.2 Da    PI: 6.0617
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G141500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-14214270359
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         + kr+rr+ +NRe+ArrsR+RK+a++ eLe  v +L  e ++L k+l +++ ++++ 
  Gorai.007G141500.1 214 DAKRARRMRSNRESARRSRRRKQAQLNELEAQVGQLRVEHSTLLKRLTNMNHKYDEA 270
                         68******************************************9999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-10211266No hitNo description
SMARTSM003382.7E-16212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.047214269IPR004827Basic-leucine zipper domain
PfamPF001701.1E-11215268IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-9216266No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
PfamPF124983.7E-25283403IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNTVFSVDDF SDSFWAAPAS DDALGMTRSH SEWALERFLE EFSGAGVAIS GSHAGENVIG  60
PSLMAPQSSV SKVEEGDVVE IKRPNSQNHN HPPSDQTPTV PTASDDYHTI LKSKLELECA  120
AVALSRALAV KAEDSSAEAE NHGLPSGSKV QGSSKVQGQG ETDVAHCGTL TGSTTQKKSG  180
VQVRQATSGS SREDSDSDEL EGDTETADNM DPADAKRARR MRSNRESARR SRRRKQAQLN  240
ELEAQVGQLR VEHSTLLKRL TNMNHKYDEA AVDNRIMKAD IETLRAKVKM AEETVKRVTG  300
FNPALLSRPN VPSVGMPFVS NPLEASTVAP LPFQSNANQF FNQPVPNIVA SIHHQRVDNS  360
FRGNTLVPPD VNSQTKGVKN VNETSVLQHG PSLDCVPDQI GPGVSPCGPM PGWEPGLLPH  420
AGDRNNKQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235RRSRRRKQ
2230235SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5773032e-35JX577303.1 Gossypium hirsutum clone NBRI_GE9096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490636.10.0PREDICTED: basic leucine zipper 25 isoform X1
TrEMBLA0A0D2QSI10.0A0A0D2QSI1_GOSRA; Uncharacterized protein
STRINGGorai.007G141500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.12e-65basic leucine zipper 25
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]