PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G122300.6
Common NameB456_007G122300, LOC105802947
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 270aa    MW: 30409.2 Da    PI: 5.6214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G122300.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-3055113259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Gorai.007G122300.6  55 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 113
                         699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3149115IPR003657WRKY domain
PROSITE profilePS5081130.97449115IPR003657WRKY domain
SuperFamilySSF1182907.85E-2652115IPR003657WRKY domain
SMARTSM007747.1E-3654114IPR003657WRKY domain
PfamPF031062.0E-2556113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MIPNSTQLVL RHPKEGITFL SLRYVVFSRK VVEKIVVTVK VEENGGKLKS EGPPSDLWSW  60
RKYGQKPIKG SPYPRGYYRC STSKGCSAKK QVERCKTDAS MLIITYTSSH NHPGPNLHCA  120
DLKQSPKEPE TTHSDDDKPP TTTLKQLPEV SEKEPEEVKK EQNKTSSTDE DASEEQHFHY  180
LQSPLSFPQN NIISPEDPFN GNLEKTHDTL GFLLDEEPLS CLHITTSSIP KSEENDFFDE  240
LEELPISSAF TSLMMRSKFW DEGIPVVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22551151779Disease resistance protein RRS1
5w3x_D2e-22551151779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258730.0KJ825873.1 Gossypium hirsutum WRKY protein 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490316.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
RefseqXP_012490317.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
RefseqXP_012490318.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLA0A0D2TDQ70.0A0A0D2TDQ7_GOSRA; Uncharacterized protein
STRINGGorai.007G122300.11e-178(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-34WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]