PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G114400.3 | ||||||||
Common Name | B456_007G114400, LOC105802861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 44680.8 Da PI: 5.0672 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.6 | 2.1e-35 | 5 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +GfrFhPtd e + e L +k++ ++ ++ + vi+++ di+k+eP +Lp +++ ++++ wyfF++ + ky+++krknr+tk+gyW Gorai.007G114400.3 5 KGFRFHPTDAEAI-ELLWEKLQLDRDSFVQlgdslvpVITQLnDICKFEPAELPgrSELVSGDNVWYFFCSPRYKYRNSKRKNRVTKQGYW 94 7************.89999999888444334556665899998***********5336677999*************************** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykg....rapkgektdWvmheyrl 128 + tgk+++++++ +++ +g+++ Lvfykg +++k++kt Wvmhe++l Gorai.007G114400.3 95 NPTGKSRTIVTTcdGKKITGTRQALVFYKGrvcvKNKKANKTLWVMHEFEL 145 **********99878888**********753333789999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-35 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.348 | 3 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-18 | 5 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MNYVKGFRFH PTDAEAIELL WEKLQLDRDS FVQLGDSLVP VITQLNDICK FEPAELPGRS 60 ELVSGDNVWY FFCSPRYKYR NSKRKNRVTK QGYWNPTGKS RTIVTTCDGK KITGTRQALV 120 FYKGRVCVKN KKANKTLWVM HEFELTLNLP NQKSLILCKL KKKYGKINVS IGEEEQSNQY 180 LPSSNLENHC TNNGVPKLNS TEPVAFSEYS GIQSELVNNE QTVDEFVDSL LIKNDEFYSN 240 QPYFVHDKQD PKVYSDFQIY NANTDIPKNQ EGFSDLTYQK LRTPNDRVWT MNEVGSSSGL 300 VANDPSYSNG DNNQHDTSFA EQGSSLAFEN HVLVDSISMG GSGFDEFLHN GLFMAELSPL 360 PEPPKNPDEV QNHQFSTNEQ DEFCNSIFIT TD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-19 | 1 | 145 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490207.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X2 | ||||
TrEMBL | A0A0D2QQY7 | 0.0 | A0A0D2QQY7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G114400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 2e-24 | NAC domain containing protein 96 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G114400.3 |
Entrez Gene | 105802861 |
Publications ? help Back to Top | |||
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