PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G114400.1
Common NameB456_007G114400, LOC105802861
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 395aa    MW: 44938 Da    PI: 4.9821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G114400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.62.1e-3551453128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                         +GfrFhPtd e + e L +k++ ++ ++ +       vi+++ di+k+eP +Lp  +++ ++++ wyfF++ + ky+++krknr+tk+gyW
  Gorai.007G114400.1   5 KGFRFHPTDAEAI-ELLWEKLQLDRDSFVQlgdslvpVITQLnDICKFEPAELPgrSELVSGDNVWYFFCSPRYKYRNSKRKNRVTKQGYW 94 
                         7************.89999999888444334556665899998***********5336677999*************************** PP

                 NAM  84 katgkdkevlsk..kgelvglkktLvfykg....rapkgektdWvmheyrl 128
                         + tgk+++++++  +++ +g+++ Lvfykg    +++k++kt Wvmhe++l
  Gorai.007G114400.1  95 NPTGKSRTIVTTcdGKKITGTRQALVFYKGrvcvKNKKANKTLWVMHEFEL 145
                         **********99878888**********753333789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-353163IPR003441NAC domain
PROSITE profilePS5100539.3483163IPR003441NAC domain
PfamPF023655.4E-185145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MNYVKGFRFH PTDAEAIELL WEKLQLDRDS FVQLGDSLVP VITQLNDICK FEPAELPGRS  60
ELVSGDNVWY FFCSPRYKYR NSKRKNRVTK QGYWNPTGKS RTIVTTCDGK KITGTRQALV  120
FYKGRVCVKN KKANKTLWVM HEFELTLNLP NQKSLILCKL KKKYGKINVS IGEEEQSNQY  180
LPSSNLENHC TNNGVPKEQL NSTEPVAFSE YSGIQSELVN NEQTVDEFVD SLLIKNDEFY  240
SNQPYFVHDK QDPKVYSDFQ IYNANTDIPK NQEGFSDLTY QKLRTPNDRV WTMNEVGSSS  300
GLVANDPSYS NGDNNQHDTS FAEQGSSLAF ENHVLVDSIS MGGSGFDEFL HNGLFMAELS  360
PLPEPPKNPD EVQNHQFSTN EQDEFCNSIF ITTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-19114513140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490206.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
TrEMBLA0A0D2P7E00.0A0A0D2P7E0_GOSRA; Uncharacterized protein
STRINGGorai.007G114400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2221145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-25NAC domain containing protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]