PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G113300.3

Common Name

B456_007G113300, LOC105802851

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 335aa MW: 37680.7 Da PI: 7.3605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G113300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.1e-14	148	199	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G113300.3 148 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 199 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.13E-12	146	203	No hit	No description
SuperFamily	SSF47459	5.76E-17	147	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.126	147	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-15	148	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-11	148	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	153	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MPFLQMLQSV ESPQLFAFKE PNFQTLLRLQ HMKKPWELNT NPFIPEMETQ VQALELESCV 60 THETVLDLHS PVKSETKELK KSPPSSSCAE VLSSGSNQHQ PKSDNCSGEP NLGSSPQKIF 120 TKSPPITRER RKRKRTKAAK NKEEVESQRM THIAVERNRR RQMNDYLNSL RSLMPPCYIQ 180 RGDQASIIAG AIDFVKELEQ LLQSLEAQKR TGKVHESNNS MSNPAMEIHQ QEYENGSEDG 240 HCGEEVKAES KTGAAEVEVN VIHNHVNLKI QCSRRAGQLI QAIVTLETLR LTVLHLNITT 300 SRASVLYSFN LKMEDDSALR SADEIAAAVH QIFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	134	RRKRKR
2	148	159	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490191.1	0.0	PREDICTED: transcription factor bHLH67-like isoform X3
TrEMBL	A0A0D2SI45	0.0	A0A0D2SI45_GOSRA; Uncharacterized protein
STRING	Gorai.007G113300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G113300.3
Entrez Gene	105802851

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]