PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G088600.1
Common NameB456_007G088600, LOC105801450
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 460aa    MW: 51191.1 Da    PI: 7.6369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G088600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001785102219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F ++ ++  H
  Gorai.007G088600.1  85 VCENCGKEFFSWKSFLEH 102
                         6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-51335No hitNo description
SMARTSM003550.171335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5771335IPR007087Zinc finger, C2H2
PfamPF139122.0E-51535IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-579103No hitNo description
SMARTSM0035528084104IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9224248IPR007087Zinc finger, C2H2
SMARTSM003550.13224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076224251IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576677.94E-5292318No hitNo description
PfamPF139122.4E-13294318IPR007087Zinc finger, C2H2
SMARTSM003550.44295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAFIVDQQSE FKYFCKICNK RFGCGRALGG HMRAHGIGDE SRFIDDDDLA SDWEDKLLEG  60
NVVPPNNERM YRLRTNPNRL KSCRVCENCG KEFFSWKSFL EHGKCSSRPG DIAESLVSSQ  120
GSEGDDDGIT RRGSSGYFSK RKRSLRSEVG NFNAFSSPSS EEEDLANCLM MLSNATVVPL  180
VTEPEESCTS ASKEEERRNT MNFITHPAIA CRPRVPTDKA KGLFECKACK KVFNSHQALG  240
GHRASHKKVK GCFAARVDDS LADEDHHGFF HKKPTSTFRF DDTLASTSKK KSKVHECSIC  300
HRVFSSGQAL GGHKRCHWIT SNSPVETSSL GKFHQLQHQV EQIQQTQRPN FVDDSEPLDL  360
NLPAPVDELV RRNHIHPSSF DVSTKIYLQP CSGIDATEKE DNQNHLQVDN TNNNCSNSKQ  420
NEEDKAKSKV KLAKLSGLKD INMSGGSSPW LQVGIGSDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488207.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2SGR20.0A0A0D2SGR2_GOSRA; Uncharacterized protein
STRINGGorai.007G088600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-33C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]