PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G086700.2 | ||||||||
Common Name | B456_007G086700, LOC105802549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 293aa MW: 32096.9 Da PI: 6.5077 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 130 | 184 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Gorai.007G086700.2 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.8 | 9.5e-41 | 130 | 219 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Gorai.007G086700.2 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKSKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 219 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.4E-30 | 1 | 99 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 105 | 187 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.42E-19 | 113 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 126 | 186 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-15 | 128 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.22E-15 | 130 | 187 | No hit | No description |
Pfam | PF00046 | 6.7E-16 | 130 | 184 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 161 | 184 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.7E-12 | 186 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.6E-25 | 186 | 229 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGDKDDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SDGQLETRSV 60 AGGIDVNQAP ALAECEEEDV VSSPNSTVSS IGGKRNERDP VCDETEAERP SCSRSSDDED 120 GGGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAMQLNLRPR QVEVWFQNRR 180 ARTKSKQTEV DCEYLKRCCD NLTEENRRLQ KEVQELRALK LSPQLYTHIN PPTTLTMCPS 240 CERVAVASSS SSSLAASSAP NSKHQRPVPA SSWAALPLPV THRPFNAPAS RP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | SRKKLRL |
2 | 178 | 186 | RRARTKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489704.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2 | ||||
Swissprot | P46602 | 1e-102 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0D2QNX7 | 0.0 | A0A0D2QNX7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G086700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-90 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G086700.2 |
Entrez Gene | 105802549 |
Publications ? help Back to Top | |||
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