PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.007G086600.5 | ||||||||
Common Name | B456_007G086600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 20016.2 Da PI: 4.5369 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.7e-18 | 130 | 182 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ Gorai.007G086600.5 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRAR 182 788899*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 77.9 | 1.7e-25 | 130 | 182 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRAR Gorai.007G086600.5 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRAR 182 69**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.1E-31 | 1 | 99 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 112 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.98E-18 | 113 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 126 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-8 | 128 | 182 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.30E-15 | 130 | 182 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 130 | 182 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MDDKDDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SDGQLETRSV 60 AGGIDVNQAP ALAECEEEDG VSSPNSTVSS IGGKRNERDP VCDETEAERP SCSRSSDDED 120 GGGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAMQLNLRPR QVEVWFQNRR 180 AR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 134 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489701.1 | 1e-130 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2 | ||||
Swissprot | P46602 | 5e-58 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0D2TBI2 | 1e-129 | A0A0D2TBI2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G086600.1 | 1e-114 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60390.1 | 9e-48 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.007G086600.5 |
Publications ? help Back to Top | |||
---|---|---|---|
|